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================
`crispr-screens`
================

`crispr-screens` is a containerized Snakemake workflow for the analysis of CRISPR screens. It provides a scalable and highly reproducible analysis pipeline.

Contents
--------

.. toctree::
   :maxdepth: 1
   :caption: Contents:

.. toctree::
   :caption: Experimental considerations
   :maxdepth: 2

   experiment/experiment.rst

.. toctree::
   :caption: Installion of required software
   :maxdepth: 2

   installation/installation.rst

.. toctree::
   :caption: Workflow usage
   :maxdepth: 2

   usage/usage.rst

.. toctree::
   :caption: Protocols
   :maxdepth: 1

   protocols/protocol.rst

.. toctree::
   :caption: About
   :maxdepth: 1

   about/about.rst

.. toctree::
   :caption: Source code
   :maxdepth: 1

   sourcecode/sourcecode.rst